{
  "_id": "6ad0c1879a0ea1f99f78c0a2",
  "Package": "summarySCI",
  "Title": "Produces Publication-Ready Summary Tables",
  "Version": "1.0.0",
  "Authors@R": "c(person(\"Sämi\", \"Schär\", email = \"Saemi.Schaer@swisscancerinstitute.ch\", role = \"aut\"),\nperson(\"Charlotte\", \"Micheloud\", email = \"Charlotte.Micheloud@swisscancerinstitute.ch\",\nrole = c(\"cre\", \"aut\")))",
  "Description": "Produces tables with descriptive statistics for\ncontinuous, categorical and dichotomous variables. It is\nlargely based on the package 'gtsummary'; Sjoberg DD et al.\n(2021) <doi:10.32614/RJ-2021-053>.",
  "License": "LGPL-3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "URL": "https://sakk-statistics.github.io/summarySCI/,\nhttps://github.com/SAKK-Statistics/summarySCI",
  "BugReports": "https://github.com/SAKK-Statistics/summarySCI/issues",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libfribidi-dev make libharfbuzz-dev libicu-dev\nlibjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev\nlibxml2-dev libssl-dev libnode-dev libx11-dev zlib1g-dev",
  "Repository": "https://sakk-statistics.r-universe.dev",
  "Date/Publication": "2026-10-15 09:40:46 UTC",
  "RemoteUrl": "https://github.com/sakk-statistics/summarysci",
  "RemoteRef": "HEAD",
  "RemoteSha": "5f625327ac2e6bd4dc9ba2e23ecccfa4c8db5d6e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-15 11:57:36 UTC",
    "User": "root"
  },
  "Author": "Sämi Schär [aut],\nCharlotte Micheloud [cre, aut]",
  "Maintainer": "Charlotte Micheloud <Charlotte.Micheloud@swisscancerinstitute.ch>",
  "_user": "sakk-statistics",
  "_type": "src",
  "_file": "summarySCI_1.0.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/80c386d77a27e2f3724280028cafde3188e1f3e2188be94f85a6cf7090e158dd",
  "_filesize": 1475465,
  "_sha256": "80c386d77a27e2f3724280028cafde3188e1f3e2188be94f85a6cf7090e158dd",
  "_expires": "2027-01-23T12:05:24.000Z",
  "_created": "2026-10-15T11:57:36.000Z",
  "_published": "2026-10-15T12:05:26.844Z",
  "_buildurl": "https://github.com/r-universe/sakk-statistics/actions/runs/38730346071",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 116408841785,
      "time": 288,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11970591126"
    },
    {
      "job": 116408841783,
      "time": 372,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11970366512"
    },
    {
      "job": 116408841835,
      "time": 314,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11970886556"
    },
    {
      "job": 116408842023,
      "time": 289,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11971141351"
    },
    {
      "job": 116406450862,
      "time": 355,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11970615340"
    },
    {
      "job": 116408841812,
      "time": 131,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11971470220"
    },
    {
      "job": 116408841791,
      "time": 353,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11970486441"
    },
    {
      "job": 116408841736,
      "time": 316,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11971385868"
    },
    {
      "job": 116408841887,
      "time": 293,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11971390870"
    }
  ],
  "_upstream": "https://github.com/sakk-statistics/summarysci",
  "_commit": {
    "id": "5f625327ac2e6bd4dc9ba2e23ecccfa4c8db5d6e",
    "author": "saemischaer <saemi.schaer@sakk.ch>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #38 from SAKK-Statistics/vignette_summaryLevel\n\nVignette summary level (added back)",
    "time": 1792057246
  },
  "_maintainer": {
    "name": "Charlotte Micheloud",
    "email": "charlotte.micheloud@swisscancerinstitute.ch"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "Hmisc",
      "role": "Imports"
    },
    {
      "package": "cardx",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "gtsummary",
      "version": ">= 2.3.0",
      "role": "Imports"
    },
    {
      "package": "forcats",
      "role": "Imports"
    },
    {
      "package": "labelled",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "flextable",
      "role": "Imports"
    },
    {
      "package": "officer",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "tidyverse",
      "role": "Suggests"
    },
    {
      "package": "survival",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "sakk-statistics",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-04",
      "n": 2
    },
    {
      "week": "2026-06",
      "n": 2
    },
    {
      "week": "2026-07",
      "n": 1
    },
    {
      "week": "2026-08",
      "n": 3
    },
    {
      "week": "2026-32",
      "n": 1
    },
    {
      "week": "2026-36",
      "n": 3
    },
    {
      "week": "2026-38",
      "n": 1
    },
    {
      "week": "2026-39",
      "n": 2
    },
    {
      "week": "2026-41",
      "n": 1
    },
    {
      "week": "2026-42",
      "n": 8
    }
  ],
  "_tags": [
    {
      "name": "v1.0.0",
      "date": "2026-10-14"
    },
    {
      "name": "v.1.0.0",
      "date": "2026-10-15"
    },
    {
      "name": "v_1.0.0",
      "date": "2026-10-15"
    },
    {
      "name": "v__1.0.0",
      "date": "2026-10-15"
    },
    {
      "name": "v___1.0.0",
      "date": "2026-10-15"
    }
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "charlottemicheloud",
      "count": 127,
      "uuid": 43375942
    },
    {
      "user": "saemischaer",
      "count": 57,
      "uuid": 173363577
    },
    {
      "user": "sakk-vsomas",
      "count": 3,
      "uuid": 151931296
    },
    {
      "user": "ddsjoberg",
      "count": 2,
      "uuid": 26774684
    },
    {
      "user": "tudorandreij",
      "count": 1,
      "uuid": 84449946
    }
  ],
  "_userbio": {
    "uuid": 151913086,
    "type": "organization",
    "name": "Swiss Cancer Institute Statistics",
    "followers": 5
  },
  "_downloads": {
    "count": 338,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/summarySCI"
  },
  "_devurl": "https://github.com/sakk-statistics/summarysci",
  "_pkgdown": "https://sakk-statistics.github.io/summarySCI/",
  "_searchresults": 7,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/summarySCI.html"
  ],
  "_homeurl": "https://github.com/sakk-statistics/summarysci",
  "_realowner": "sakk-statistics",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2025-10-15"
    },
    {
      "version": "0.1.2",
      "date": "2026-09-14"
    }
  ],
  "_exports": [
    "boxplotSCI",
    "summaryByVisit",
    "summaryLevels",
    "summaryTable"
  ],
  "_datasets": [
    {
      "name": "hemoglobin_data",
      "title": "Hemoglobin data (to illustrate 'boxplot_over_time()')",
      "object": "hemoglobin_data",
      "file": "hemoglobin_data.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ID",
        "Arm",
        "visit",
        "visit_nr",
        "hb"
      ],
      "rows": 1307,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "boxplotSCI",
      "title": "Boxplot over time",
      "topics": [
        "boxplotSCI"
      ]
    },
    {
      "page": "hemoglobin_data",
      "title": "Hemoglobin data (to illustrate 'boxplot_over_time()')",
      "topics": [
        "hemoglobin_data"
      ]
    },
    {
      "page": "summaryByVisit",
      "title": "Creates publication-ready summary tables for data grouped, by visit",
      "topics": [
        "summaryByVisit"
      ]
    },
    {
      "page": "summaryByVisitCategorical",
      "title": "Creates publication-ready summary tables for categorical data grouped, by visit",
      "topics": [
        "summaryByVisitCategorical"
      ]
    },
    {
      "page": "summaryByVisitContinuous",
      "title": "Creates publication-ready summary tables for continuous data grouped, by visit",
      "topics": [
        "summaryByVisitContinuous"
      ]
    },
    {
      "page": "summaryLevels",
      "title": "summaryLevels",
      "topics": [
        "summaryLevels"
      ]
    },
    {
      "page": "summaryTable",
      "title": "Creates publication-ready summary tables",
      "topics": [
        "summaryTable"
      ]
    }
  ],
  "_readme": "https://github.com/sakk-statistics/summarysci/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "backports",
    "base64enc",
    "bigD",
    "bit",
    "bit64",
    "bitops",
    "bslib",
    "cachem",
    "cards",
    "cardx",
    "checkmate",
    "cli",
    "clipr",
    "cluster",
    "colorspace",
    "commonmark",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "digest",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "flextable",
    "fontawesome",
    "fontBitstreamVera",
    "fontLiberation",
    "fontquiver",
    "forcats",
    "foreign",
    "Formula",
    "fs",
    "gdtools",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gt",
    "gtable",
    "gtsummary",
    "haven",
    "highr",
    "Hmisc",
    "hms",
    "htmlTable",
    "htmltools",
    "htmlwidgets",
    "isoband",
    "jquerylib",
    "jsonlite",
    "juicyjuice",
    "knitr",
    "labeling",
    "labelled",
    "lifecycle",
    "litedown",
    "magrittr",
    "markdown",
    "memoise",
    "mime",
    "nnet",
    "officer",
    "openssl",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "ragg",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "reactable",
    "reactR",
    "readr",
    "rlang",
    "rmarkdown",
    "rpart",
    "rstudioapi",
    "S7",
    "sass",
    "scales",
    "stringi",
    "stringr",
    "sys",
    "systemfonts",
    "textshaping",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "tzdb",
    "utf8",
    "uuid",
    "V8",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr",
    "xfun",
    "xml2",
    "yaml",
    "zip"
  ],
  "_vignettes": [
    {
      "source": "boxplotSCI.Rmd",
      "filename": "boxplotSCI.html",
      "title": "BoxplotSCI",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Setup and data",
        "Basic boxplots for two groups",
        "Group names",
        "One group",
        "Time points as factors",
        "Customization of the boxplots",
        "Legend",
        "Size and color of boxes",
        "Axes",
        "Lines and colors",
        "Special case: only one time point",
        "Time point is missing for one group"
      ],
      "created": "2026-10-14 09:17:44",
      "modified": "2026-10-14 09:17:44",
      "commits": 1
    },
    {
      "source": "summaryLevels.Rmd",
      "filename": "summaryLevels.html",
      "title": "summaryLevels",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Setup and data",
        "Basic table",
        "By group",
        "Performing a statistical test",
        "Add a confidence interval",
        "Further steps:"
      ],
      "created": "2025-07-31 11:34:13",
      "modified": "2026-10-15 09:40:46",
      "commits": 3
    },
    {
      "source": "summaryByVisit.Rmd",
      "filename": "summaryByVisit.html",
      "title": "summaryByVisit",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Setup and data",
        "Basic table",
        "Add visit group",
        "By group",
        "Add N",
        "Change labels",
        "Further steps:"
      ],
      "created": "2025-07-31 11:34:13",
      "modified": "2026-10-14 07:25:24",
      "commits": 5
    },
    {
      "source": "summaryTable.Rmd",
      "filename": "summaryTable.html",
      "title": "summaryTable",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Setup and data",
        "Simple table",
        "Displayed name of variables",
        "Adding number of observations",
        "Overall column",
        "Variable types",
        "Statistic type",
        "Tests",
        "Missing values",
        "Further customization",
        "Next steps"
      ],
      "created": "2025-07-10 08:40:35",
      "modified": "2026-10-14 07:23:21",
      "commits": 9
    }
  ],
  "_score": 6.204119982655925,
  "_indexed": true,
  "_nocasepkg": "summarysci",
  "_universes": [
    "sakk-statistics"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-15T11:59:52.000Z",
      "distro": "resolute",
      "commit": "5f625327ac2e6bd4dc9ba2e23ecccfa4c8db5d6e",
      "fileid": "https://r2.ropensci.org/c688c9f9195589473500f178c3faead3364ab279b75212f43d6e547505a8d3f0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sakk-statistics/actions/runs/38730346071"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-15T12:00:16.000Z",
      "distro": "resolute",
      "commit": "5f625327ac2e6bd4dc9ba2e23ecccfa4c8db5d6e",
      "fileid": "https://r2.ropensci.org/228a7d914adf70eb014cb4a3ab1fd79337b1d4df4f8e261a27f4503264473833",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sakk-statistics/actions/runs/38730346071"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-10-15T12:01:40.000Z",
      "commit": "5f625327ac2e6bd4dc9ba2e23ecccfa4c8db5d6e",
      "fileid": "https://r2.ropensci.org/a0cda2c9d4099d61194baf7155dc0824e8104b2a9a3e986352be75f02de246e4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sakk-statistics/actions/runs/38730346071"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-10-15T12:01:13.000Z",
      "commit": "5f625327ac2e6bd4dc9ba2e23ecccfa4c8db5d6e",
      "fileid": "https://r2.ropensci.org/443d339a98f8ec0c5d5cd73d17fd841f4b45f41228ebbd9e935961f94af44fea",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sakk-statistics/actions/runs/38730346071"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-10-15T12:00:08.000Z",
      "commit": "5f625327ac2e6bd4dc9ba2e23ecccfa4c8db5d6e",
      "fileid": "https://r2.ropensci.org/48bc826688621ad476807d2d9a61de32757ea8e62fecf3759a283d63b1646096",
      "status": "success",
      "buildurl": "https://github.com/r-universe/sakk-statistics/actions/runs/38730346071"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-15T11:59:05.000Z",
      "commit": "5f625327ac2e6bd4dc9ba2e23ecccfa4c8db5d6e",
      "fileid": "https://r2.ropensci.org/d03decfe02b0ba98dcc160a9df33110e4a2ab1f46ed750b24e97227bf8f3a08e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sakk-statistics/actions/runs/38730346071"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-15T11:58:55.000Z",
      "commit": "5f625327ac2e6bd4dc9ba2e23ecccfa4c8db5d6e",
      "fileid": "https://r2.ropensci.org/992a9f34e4918dbcdee2712b07cae96617091f02724a9bf492a0093758d38454",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sakk-statistics/actions/runs/38730346071"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-15T11:59:04.000Z",
      "commit": "5f625327ac2e6bd4dc9ba2e23ecccfa4c8db5d6e",
      "fileid": "https://r2.ropensci.org/710119235ecd0ee00e013d1e04177ff73490d4c0518b23ab0c47f09b54cdf773",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sakk-statistics/actions/runs/38730346071"
    }
  ]
}